About PredictProtein

PredictProtein integrates feature prediction for secondary structure, solvent accessibility, transmembrane helices, globular regions, coiled-coil regions, structural switch regions, B-values, disorder regions, intra-residue contacts, protein-protein and protein-DNA binding sites, sub-cellular localization, domain boundaries, beta-barrels, cysteine bonds, metal binding sites and disulphide bridges.

Citing PredictProtein

If you find PredictProtein useful please cite the paper along with the specific method you used:

BibBase bernhofer, m
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  2021 (1)
PredictProtein - Predicting Protein Structure and Function for 29 Years. Bernhofer, M.; Dallago, C.; Karl, T.; Satagopam, V.; Heinzinger, M.; Littmann, M.; Olenyi, T.; Qiu, J.; Schütze, K.; Yachdav, G.; Ashkenazy, H.; Ben-Tal, N.; Bromberg, Y.; Goldberg, T.; Kajan, L.; O’Donoghue, S.; Sander, C.; Schafferhans, A.; Schlessinger, A.; Vriend, G.; Mirdita, M.; Gawron, P.; Gu, W.; Jarosz, Y.; Trefois, C.; Steinegger, M.; Schneider, R.; and Rost, B. Nucleic Acids Research, 49(W1): W535-W540. 05 2021.
PredictProtein - Predicting Protein Structure and Function for 29 Years [link]Paper   doi   link   bibtex  

Supporting Databases

Database Name Description Reference Download
UniRef Used for sequence homology searches by PSI-BLAST abstract http://www.uniprot.org/help/uniref
PDB The PDB archive contains information about experimentally-determined structures of proteins, nucleic acids, and complex assemblies. As a member of the wwPDB, the RCSB PDB curates and annotates PDB data according to agreed upon standards. abstract http://www.rcsb.org/pdb/download/download.do
Pfam A collection of protein families abstract ftp://ftp.sanger.ac.uk/pub/databases/Pfam/releases/
PROSITE Database of biologically significant sites, patterns and profiles abstract ftp://ftp.expasy.org/databases/prosite/